Is there a way for me to save the plots in the applet together with the h5 files? Thanks in advance!
Saving Applet Image
At least I am not aware of such a feature, but if it exists, I would love to learn.
For now, we store auto-generated matplotlib plots with our code. See for example https://gitlab.com/duke-artiq/dax/-/blob/master/dax/modules/hist_context.py?ref_type=heads#L1331 which can be called in the analysis phase. Though that is all integrated in our DAX library, so the pointed out function is only available when you base your code on DAX.
This is not automatic, but pyqtgraph based applets have an option to export to PNG in the right-click menu. You can also open the HDF5 in the ARTIQ browser to do that after the fact.